The second DIPnet workshop: Molecular Ecology and Bioinformatics in the Philippines and SE Asia was held at the Microtel Hotel, Queszon City, Philippines 24-30 July 2016
Participants (*instructors and organizers):
| Name | Affiliation |
| Chona Camille Abeledo | De La Salle University |
| Ma. Carmen Ablan-Lagman | De La Salle University |
| Altair Agmata | Marine Science Institute, University of the Philippines Diliman |
| Roselyn Aguila | National Fisheries Research and Development Institute (NFRDI) |
| Angela Camille Aguila | Marine Science Institute, University of the Philippines Diliman |
| Simon Alcantara | Institute of Biological Studies, College of Arts and Sciences, University of the Philippines Los Baños |
| Kim Andrews* | University of Idaho |
| Jonathan A. Anticamara | Institute of Biology, UP Diliman |
| Jake Baquiran | Marine Science Institute, University of the Philippines Diliman |
| Zubaida Basiao | Institute of Biology, UP Diliman |
| Mahdi Belcaid* | University of Hawaii |
| Inggat Laya Casilagan | Marine Science Institute, University of the Philippines Diliman |
| Ruby Castrence-Gonzales | Mindanao State University at Naawan |
| Cecilia Conaco* | University of the Philippines |
| Jeric Da-anoy | Marine Science Institute, University of the Philippines Diliman |
| Maria Rowena Eguia | Southeast Asian Fisheries Development Center, Aquaculture Department (SEAFDEC/AQD) Manila Office |
| Michelle R. Gaither* | Durham University UK |
| Gihanna Gaye Galindez | Marine Science Institute, University of the Philippines Diliman |
| Maria Victoria Faith Garcia | De La Salle University |
| Ivane Gerasmio | College of Science and Mathematics, Department of Biological Sciences, Mindanao State University-Iligan Institute of Technology |
| Rachel Gotanco* | University of the Philippines |
| Joana Joy Huervana | Southeast Asian Fisheries Development Center, Aquaculture Department (SEAFDEC/AQD) |
| Padilla Philip Ian | Division of Biological Sciences, College of Arts and Sciences, University of the Philippines Visayas |
| Claire Samantha Juanico | Central Luzon State University |
| Kevin Labrador | Marine Science Institute, University of the Philippines Diliman |
| Katja Lehmann* | Centre for Ecology and Hydrology |
| Crissa Ann Lilagan | De La Salle University |
| Apollo Marco Lizano | Marine Science Institute, University of the Philippines Diliman |
| Adrian Luczon | Institute of Biology, University of the Philippines Diliman |
| Deo Angelo Macahig | Marine Science Institute, University of the Philippines Diliman |
| Liezel Magtoto | Department of Biology, University of the Philippines Baguio |
| Paula Martinez* | University of Queensland |
| Din Matias* | University of Queensland |
| Michael John Mendiola | Marine Science Institute, University of the Philippines Diliman |
| Michael Angelou Nada | Marine Science Institute, University of the Philippines Diliman |
| Feliciano June Ordoñez | Marine Science Institute, University of the Philippines Diliman |
| Maria Catherine Otero | University of the Philippines Mindanao |
| Faith Paran* | University of the Philippines |
| Fiona Pedroso | Institute of Aquaculture, College of Fisheries and Ocean Science, University of the Philippines Visayas |
| Ross Philip | University of Waikato |
| Jonas Quilang | Institute of Biology, University of the Philippines Diliman |
| Cynthia Riginos* | University of Queensland |
| Mudjekeewis Santos | National Fisheries Research and Development Institute (NFRDI) |
| Persie Mark Sienes | Institute of Environmental and Marine Sciences, Silliman University |
| Marilyn Sumayo | Division of Biological Sciences, College of Arts and Sciences, University of the Philippines Visayas |
| Andrew Torres | Marine Science Institute, University of the Philippines Diliman |
| Shelah Mae Ursua | Southeast Asian Fisheries Development Center, Aquaculture Department (SEAFDEC/AQD) |
| Minerva Ventolero | National Fisheries Research and Development Institute (NFRDI) |
| Patricia Wepfer | OIST |
| Dianne Mira Yap | Institute of Environmental and Marine Sciences, Silliman University |
| Sandra Yap | Institute of Biology, University of the Philippines Diliman |
| Brendel Mae Zarate | University of the Philippines Mindanao |
Agenda
Monday, 25 July
9:00 DIPnet Course Welcome – Gaither & Gotanco
9:15 Overview of DIPnet – Gaither
9:45 Introductions
10:30 Break
10:45Lab: Data Carpentry; introduction to the Unix command line and R – Martinez & Belcaid
12:00 Lunch
13:30 Lab: continued
15:00 Break
15:30 Lab: continued
17:00 Lab finished
Tuesday, 26 July
9:00 Talk: Fiona Pedroso & Roselyn Aguila
9:45 Lab: Data Carpentry; introduction to the Unix command line and R – Martinez & Belcaid
10:30 Break
10:45 Lab: Continued
12:00 Lunch
13:30 Lab: Continued
15:00 Break
15:30 Lab: Continued
17:00 Lab finished
Wednesday, 27 July
9:00 Talk: Ruby Castrence-Gonzales, Rachel Gotanco
9:45 Lecture: Introduction to Next-Gen sequencing and RADSeq – Andrews & Gaither
10:30 Break
10:45 Lecture: Introduction to Next-Gen sequencing and RADSeq – Andrews & Gaither
12:00 Lunch
13:30 Lab: RADSeq data analysis tutorial – Andrews & Gaither
15:00 Break
15:30 Lab: Continued
17:00 Lab finished
Thursday, 28 July
9:00 Lecture: Preliminary findings and population genetics using DIPnet data – Riginos
10:30 Break
10:45 Lecture: Metagenomics for Biodiversity Research – Lehmann
12:00 Lunch
13:15 Lab: Taxonomic diversity analysis of amplicon data using QIIME – Lehmann
15:00 Break
15:30 Lab: Continued
17:00 Lab finished
Friday, 29 July
9:00 Lecture: Transcriptomics – Conaco
10:00 Break
10:20 Lab/Demonstration: Transcriptomics – Conaco
12:00 Lunch
13:30 Discussion: Leveraging DIPnet data for proposals to SE Asian funding bodies – Gotanco
15:00 Break
15:30 Discussion continued
17:00 Meeting closes