The first DIPnet workshop: Molecular Ecology and Biodiversity Informatics in Southeast Asia was held at the Praja Hotel, Denpasar, Bali, Indonesia 2-8 August 2015
Participants (*instructors and organizers):
| Name | Affiliation |
| Ambariyanto | Diponegoro University |
| Areej Alsheikh-Hussain* | University of Queensland |
| Paul Barber* | University of California, Los Angeles |
| Subha Bhassu | University of Malaya, Institute of Biological Science |
| Philippe Borsa | Institut de recherché pour le développement (IRD) |
| Celly Catharina | USAID |
| Patricia Cockett* | Texas A&M University, Corpus Christi |
| Eric Crandall* | University of Hawaii |
| John Deck* | Biocode, LLC |
| Nur Fadli | Universitas Syiah Kuala, Banda Aceh |
| Elok Faiqoh | Universitas Udayana |
| Michelle R. Gaither* | Durham University, UK |
| Rachel Gotanco | University of the Philippines & Marine Science Institute |
| Yudi Nurul Ihsan | Universitas Panjajaran, Bandung |
| Alfred Kase | Artha Wacana Christian University |
| Katja Lehmann* | Centre for Ecology and Hydrology |
| Hawis Madduppa | Bogor Agricultural University |
| IGNK Mahardika | Universitas Udayana, Bali |
| Asmi Citra Malina | UNHAS Univeritas Makassar-Sulawesi |
| Sedercor Melatunan | Universitas Pattimura |
| Agus Nuryanto | Universitas Jendral Sudirman, Purwokerto |
| Ngurah Permana | Gondol |
| Cynthia Riginos* | University of Queensland, Australia |
| Adriani, M,Si | Institut Pertanian Bogor |
| Beginer Subhan | Institut Pertanian Bogor |
| Wilson Tisera | Artha Wacana Christian University |
| Hamid Toha | Universitas Negeri Papua |
| Eko S. Wibowo | Universitas Khairun |
| Anton Wijonarno | WWF |
| Insafitri | Universitas Trunojoyo Madura |
Agenda
Monday, 3 August
9:00 DIPnet Course Welcome and Opening – Dr. Eric Crandall
9:20 Introductions
9:50 Break
10:00 Lab: Software Carpentry: Automating tasks with the Unix Shell – Areej Alsheikh-Hussain
See website: http://dipnet.github.io/2015-08-03-IBRC-Indonesia/
12:00 Lunch
13:30 Lab: continued
15:00 Break
15:30 Lab: continued
17:00 Lab finished
Tuesday, 4 August
9:00 Lab: Software Carpentry: Programming in R –Areej Alsheikh-Hussain
See website: http://dipnet.github.io/2015-08-03-IBRC-Indonesia
10:30 Break
10:45 Lab: Continued
12:00 Lunch
13:30 Lab: Continued
15:00 Break
15:30 Lab: Continued
17:00 Lab finished
Wednesday,5 August
9:00 Lecture: Genetic diversity and population connectivity in Indonesia – Dr. Hawis Madduppa
9:45 Break
10:00 Lecture: Landscape and Seascape Genetics – Dr. Cynthia Riginos
10:45 Break
11:00 Lecture: FIMS and Databases for Biodiversity – Dr. John Deck
12:00 Lunch
13:30 Lab: Population genetic statistics using DIPnet data – Dr. Cynthia Riginos
15:00 Break
15:30 Lab: Continued
16:30 – 17:30 Discussion: leveraging DIPnet data for proposals to SE countries
Thursday, 6 August
9:00 Lecture: A paradigm shift in genetics research on marine biodiversity – Dr. Subha Bhassu
9:45 Break
10:00 Lecture: RADSeq methods for Population Genomics – Dr. Michelle Gaither
10:45 Break
11:00 Discussion: leveraging DIPnet data for proposals to SE Asian funding bodies
12:00 Lunch
13:30 Lab: RAD Bioinformatic Pipelines – Dr. Michelle R. Gaither
15:00 Break
15:30 Lab: Continued
17:00 – 18:00 Optional Discussion: leveraging DIPnet data for proposals to SE Asia
Friday, 7 August
9:00 Lecture: Title TBA – Dr. Rachel Gotanco – University of the Philippines, Diliman
9:45 Break
10:00 Lecture: Metagenomics for Biodiversity Research- Dr. Katja Lehmann
10:45 Break
11:00 Discussion: leveraging DIPnet data for proposals to SE Asian funding bodies
12:00 Lunch
13:30 Lab: Taxonomic diversity analysis of amplicon data using QIIME – Dr. Katja Lehmann
15:00 Break
15:30 Lab: Continued
17:00 – 18:00 Optional Discussion: leveraging DIPnet data for proposals to SE Asia
Saturday, 8 August
Proposal outlining and writing
One on one mentoring, collaboration
Small group analysis, working on DIPnet papers
Sunday, 9 August
Optional field trip to IBRC Field Station in Pemuteran